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Instruments & Reagents

PacBio Revio System

      PacBio Revio System


Most affordable, complete, phased genome

HiFi reads combine long-read length with high accuracy, replacing multiple assays and confidently resolving complex regions beyond the limits of short reads and nanopore methods.

HiFi sequencing at scale, with less DNA input required

Built for population-scale studies and programs that don’t pause. Run up to ~2,500 human whole genomes per year, up to 480 Gb of HiFi reads per day, and up to 4 SMRT Cells simultaneously with configurable run times and flexible scheduling — so sequencing keeps pace with your science.

On-instrument multiomic insight, included

Every standard run delivers on-instrument 5mC and 6mA methylation calling—at no additional cost or bisulfite treatment—giving you access to genomic and epigenetic data from a single sample.

Confidence in every run, without the complexity

HiFi accuracy powered by SPRQ chemistry and Google Health DeepConsensus, paired with an easy, automation-ready workflow supported by compatible partners—so you get reliable results with minimal hands-on time.


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Key applications and sample throughput with SPRQ chemistry

The Revio system supports a variety of applications that benefit from accurate long HiFi reads and 500 ng input DNA requirement. Its four independent stages allow different samples and applications to be sequenced in parallel. A subset of key applications is:


LibraryApplicationPer Revio SMRT Cell

Per yeara

Expected coverageb

0.5-5 kbAmplicon sequencing> 1,000> 2.5 million50X
5-10 kbMicrobial genome384480,00030X
5-15 kbPureTarget panels9696,000>100X mean per target
5-10 kbAmpli-Fi human genome11,25020X
15-20 kbHuman genome22,50020X
15-20 kbHuman methylation profiling810,4005X
15-20 kbTranscriptome with Kinnex full-length RNA kit67,50010 million reads
  1. Annual throughput is based on 2,500 Revio SMRT Cells for 12 hour runs; 1,250 for 24 hour runs. Adaptive loading – which increases the consistency of yield per SMRT Cell – adds about 4 hours to run time, affecting the maximum number of SMRT Cells per year. 

  2. Expected coverages are estimates. 


HIFI LEVEL ACCURACY AND DATA QUALITY



The Revio system with SPRQ chemistry produces exceptional read length, quality, and variant calling performance that have made HiFi sequencing so celebrated.

Reveal a more complete genome

The complete, gapless human genome marks a new era of genomics where no region of the genome is beyond your reach. In 2021, PacBio HiFi technology was used by the Telomere-to- Telomere (T2T) Consortium to fill in those gaps.

Read length

HiFi reads are tens of kilobases long, providing the ability to resolve large variants and map to difficult regions of the genome.

Read and base quality

The Revio system provides reliable answers through exceptional accuracy, with 90% of bases Q30+ and median read accuracy ≥Q30.

Variant calling

HiFi sequencing with SPRQ chemistry on the Revio system delivers high accuracy variant detection, resulting in fewer sequencing errors relative to other technologies at lower coverage.



How Revio long-read sequencing compares



PacBio Revio with SPRQSBS sequencingNanopore sequencing
Read length

15-20 kb5

2x150 bp10–100 kb
Read accuracy

99.95% (Q33)1

99.92% (Q31)3

98.90% (Q19)4

Run time

24 hours2

44 hours72 hours
Yield

120 - 480 Gb2

2,400–3,000 Gb50–110 Gb
CoverageUnbiasedReduced at low and high (GC)Reduced in low-complexity runs

Genome completeness6

X

Variant calling – SNVs, Indels, SVs5

XX
Areas of high homologyXX
PhasingX
MethylationEvery runVia library prepEvery run

1. Read accuracy PacBio HiFi: precisionFDA Truth Challenge V2
2. HiFi yield specification based on HG002/GM24385 human DNA extracted with Nanobind CBB kit and prepared with SMRTbell prep kit 3.0. Run time specification is for the sequencing reaction. HiFi yield is dependent on library fragment size. Yield is typically lower for shorter libraries.

3. Illumina: HG002 2×150 bp NovaSeq library, precisionFDA Truth Challenge V2
4. ONT: Q20+ chemistry (R10.4, Kit 12), 
Oct 2021 GM24385 Q20+ Simplex dataset release
5. Shafin Nat Methods 2021 (
https://doi.org/10.1038/s41592-021-01299-w)
6. Cheng 2021 Nat Methods (
https://doi.org/10.1038/s41592-020-01056-5) and Shafin 2020 Nat Biotech (https://doi.org/10.1038/s41587-020-0503-6)

 

Simplified Consumables


The Revio system simplifies the HiFi sequencing experience with fewer consumables optimized for easy tracking and minimal waste. With workflow improvements, loading consumables takes under a minute at the instrument.

Revio SMRT Cell tray

One tray contains 4 high-density SMRT Cells.

Revio SPRQ sequencing plate

The sequencing plate provides reagents for sequencing up to 4 Revio SMRT Cells.



A WORKFLOW BUILT FOR YOUR SCHEDULE

The Revio system gives you a vastly simplified experience with consumables and software designed for flexibility and convenience. Whether you’re a genome center or a small lab, you can enjoy:

Fast, reliable library preparation

Library prep for the Revio system supports manual and automated prep. 

Rapid run setup

Sequencing plates are linked automatically to run designs through an NFC tag, enabling runs to be set up in less than one minute on instrument.

Flexibility to fit your schedule

The Revio work deck is isolated from the four sequencing stages, leaving the system available up to 20 hours per day for loading consumables for subsequent runs.


More HiFi reads, more samples, more discovery


System specifications with SPRQ chemistry

The Revio system utilizes nanofabricated Revio SMRT Cells and has four independent stages, allowing sequencing of multiple SMRT Cells in parallel. The onboard compute provides accurate basecalling with Google DeepConsensus, plus methylation calling in every run.

Library

Run timea

Q30+ bases

HiFi yield per SMRT Cellb

Methylation
0.5-5 kb12 hours95%6-8 million reads5mC at CpG sites and 6mA for native DNAc
5-10 kb24 hours90%35-70 Gb
10-15 kb70-100 Gb
15-20 kb100-120 Gb
20-25 kb30 hours85%100-120 Gb
  1. Run time refers to the data collection step, which determines the time between processing SMRT Cells.

  2. HiFi yield is dependent on library quality and sequencing preparation procedures.  Specified yield is based on high-quality samples prepared following best practices. 

  3. The Revio 6mA caller is designed to detect methylation in the context of the Fiber-seq chromatin assay.



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